Publications

380 entries « 1 of 8 »

Bayas, A; Mansmann, U; n, B I; Hoffmann, V S; Berthele, A; hlau, M; Kowarik, M C; Krumbholz, M; Senel, M; Steuerwald, V; Naumann, M; Hartberger, J; Kerschensteiner, M; Oswald, E; Ruschil, C; Ziemann, U; Tumani, H; Vardakas, I; Albashiti, F; Kramer, F; Soto-Rey, I; Spengler, H; Mayer, G; Kestler, H A; Kohlbacher, O; Hagedorn, M; Boeker, M; Kuhn, K; Buchka, S; Kohlmayer, F; Kirschke, J S; Behrens, L; Zimmermann, H; Bender, B; Sollmann, N; Havla, J; Hemmer, B; Berlis, A; Wiestler, B; mpfel, T; Seelos, K; nschede, J; Kemmner, R; Beer, M; Dietrich, J; Schaller, J

Prospective study validating a multidimensional treatment decision score predicting the 24-month outcome in untreated patients with clinically isolated syndrome and early relapsing-remitting multiple sclerosis, the ProVal-MS study

Neurol Res Pract, 6 (1), pp. 15, 2024.

(Abstract | BibTeX)

Pfeuffer, J; Bielow, C; Wein, S; Jeong, K; Netz, E; Walter, A; Alka, O; Nilse, L; Colaianni, P D; McCloskey, D; Kim, J; Rosenberger, G; Bichmann, L; Walzer, M; Veit, J; Boudaud, B; Bernt, M; Patikas, N; Pilz, M; Startek, M P; Kutuzova, S; Heumos, L; Charkow, J; Sing, J C; Feroz, A; Siraj, A; Weisser, H; Dijkstra, T M H; Perez-Riverol, Y; st, H; Kohlbacher, O; Sachsenberg, T

OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

Nat Methods, 2024.

(BibTeX)

Jeong, K; Kaulich, P T; Jung, W; Kim, J; Tholey, A; Kohlbacher, O

Precursor deconvolution error estimation: Ŧhe missing puzzle piece in false discovery rate in top-down proteomics

Proteomics, 24 (3-4), pp. e2300068, 2024.

(Abstract | BibTeX)

Illert, A L; Stenzinger, A; Bitzer, M; Horak, P; Gaidzik, V I; ller, Y; Beha, J; ner, Ö; Schmitt, F; mann, S; Ossowski, S; Schaaf, C P; Hallek, M; mmendorf, T H; Albers, P; Fehm, T; Brossart, P; Glimm, H; Schadendorf, D; Bleckmann, A; Brandts, C H; Esposito, I; Mack, E; Peters, C; Bokemeyer, C; hling, S; Kindler, T; l, H; Heinemann, V; hner, H; Bargou, R; Ellenrieder, V; Hillemanns, P; Lordick, F; Hochhaus, A; Beckmann, M W; Pukrop, T; Trepel, M; Sundmacher, L; Wesselmann, S; Nettekoven, G; Kohlhuber, F; Heinze, O; Budczies, J; Werner, M; Nikolaou, K; Beer, A J; Tabatabai, G; Weichert, W; Keilholz, U; Boerries, M; Kohlbacher, O; Duyster, J; Thimme, R; Seufferlein, T; Schirmacher, P; Malek, N P

The German Network for Personalized Medicine to enhance patient care and translational research

Nat Med, 2023.

(BibTeX)

Kontou, E E; Walter, A; Alka, O; Pfeuffer, J; Sachsenberg, T; Mohite, O S; Nuhamunada, M; Kohlbacher, O; Weber, T

UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis

J Cheminform, 15 (1), pp. 52, 2023.

(BibTeX)

Figaschewski, Mirjam; Sürü, Bilge; Tiede, Thorsten; Kohlbacher, Oliver

The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards

BMC Bioinformatics, 24 (1), pp. 88, 2023.

(Abstract | BibTeX)

Mühlenbruch, L; Abou-Kors, T; Dubbelaar, M L; Bichmann, L; Kohlbacher, O; Bens, M; Thomas, J; Ezić, J; Kraus, J M; Kestler, H A; von Witzleben, A; Mytilineos, J; Fürst, D; Engelhardt, D; Doescher, J; Greve, J; Schuler, P J; Theodoraki, M N; Brunner, C; Hoffmann, T K; Rammensee, H G; Walz, J S; Laban, S

The HLA ligandome of oropharyngeal squamous cell carcinomas reveals shared tumour-exclusive peptides for semi-personalised vaccination

Br J Cancer, pp. 1–11, 2023.

(Abstract | BibTeX)

Renovanz, M; Kurz, S C; Rieger, J; Walter, B; Becker, H; Hille, H; Bombach, P; Rieger, D; Grosse, L; usser, L; Skardelly, M; Merk, D J; Paulsen, F; Hoffmann, E; Gani, C; Neumann, M; Beschorner, R; ß, O; Roggia, C; Schroeder, C; Ossowski, S; Armeanu-Ebinger, S; Gschwind, A; Biskup, S; Schulze, M; Fend, F; Singer, S; Zender, L; Lengerke, C; Brucker, S Y; Engler, T; Forschner, A; Stenzl, A; Kohlbacher, O; Nahnsen, S; Gabernet, G; Fillinger, S; Bender, B; Ernemann, U; ner, Ö; Beha, J; Malek, H S; ller, Y; Ruhm, K; Tatagiba, M; Schittenhelm, J; Bitzer, M; Malek, N; Zips, D; Tabatabai, G

Clinical outcome of biomarker-guided therapies in adult patients with tumors of the nervous system

Neurooncol Adv, 5 (1), pp. vdad012, 2023.

(Abstract | BibTeX)

Bittremieux, Wout; Levitsky, Lev; Pilz, Matteo; Sachsenberg, Timo; Huber, Florian; Wang, Mingxun; Dorrestein, Pieter C

Unified and standardized mass spectrometry data processing in Python using spectrum_utils

Journal of proteome research, 22 (2), pp. 625–631, 2023.

(BibTeX)

Kleiner, Manuel; Kouris, Angela; Violette, Marlene; D’Angelo, Grace; Liu, Yihua; Korenek, Abigail; 'c, Nikola Toli; Sachsenberg, Timo; McCalder, Janine; Lipton, Mary S; others,

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

Microbiome, 11 (1), pp. 1–23, 2023.

(BibTeX)

Wang, Hong; Dai, Chengxin; Pfeuffer, Julianus; Sachsenberg, Timo; Sanchez, Aniel; Bai, Mingze; Riverol, Yasset Perez

Tissue-based absolute quantification using large-scale TMT and LFQ experiments

2023.

(BibTeX)

Bai, Mingze; Deng, Jingwen; Dai, Chengxin; Pfeuffer, Julianus; Sachsenberg, Timo; Perez-Riverol, Yasset

LFQ-Based Peptide and Protein Intensity Differential Expression Analysis

Journal of Proteome Research, 2023.

(BibTeX)

Dai, Chengxin; Pfeuffer, Julianus; Wang, Hong; Sachsenberg, Timo; Demichev, Vadim; Kohlbacher, Oliver; Perez-Riverol, Yasset

quantms: A cloud-based pipeline for proteomics reanalysis enables the quantification of 17521 proteins in 9,502 human samples.

2023.

(BibTeX)

Chandel, Shivani; Bhattacharya, Arka; Gautam, Anupam; Zeng, Wenhuan; Alka, Oliver; Sachsenberg, Timo; Gupta, GD; Narang, Raj Kumar; Ravichandiran, V; Singh, Rajveer

Investigation of the anti-cancer potential of epoxyazadiradione in neuroblastoma: experimental assays and molecular analysis

Journal of Biomolecular Structure and Dynamics, pp. 1–19, 2023.

(BibTeX)

Jeong, K; Babović, M; Gorshkov, V; Kim, J; Jensen, O N; Kohlbacher, O

FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts

Nat Commun, 13 (1), pp. 4407, 2022.

(Abstract | Links | BibTeX)

Childebayeva, A; Rohrlach, A B; Barquera, R; Rivollat, M; Aron, F; Szolek, A; Kohlbacher, O; Nicklisch, N; Alt, K W; Gronenborn, D; Meller, H; Friederich, S; Prüfer, K; Deguilloux, M F; Krause, J; Haak, W

Population Genetics and Signatures of Selection in Early Neolithic European Farmers

Mol Biol Evol, 2022.

(BibTeX)

Prokosch, H U; Bahls, T; Bialke, M; Eils, J; Fegeler, C; Gruendner, J; Haarbrandt, B; Hampf, C; Hoffmann, W; Hund, H; Kampf, M; Kapsner, L A; Kasprzak, P; Kohlbacher, O; Krefting, D; Mang, J M; Marschollek, M; Mate, S; Müller, A; Prasser, F; Sass, J; Semler, S; Stenzhorn, H; Thun, S; Zenker, S; Eils, R

The COVID-19 Data Exchange Platform of the German University Medicine

Stud Health Technol Inform, 294 , pp. 674–678, 2022.

(BibTeX)

Elhabashy, Hadeer; Merino, Felipe; Alva, Vikram; Kohlbacher, Oliver; Lupas, Andrei N

Exploring protein-protein interactions at the proteome level

Structure, 2022.

(BibTeX)

Winkler, Sebastian; Winkler, Ivana; Figaschewski, Mirjam; Tiede, Thorsten; Nordheim, Alfred; Kohlbacher, Oliver

De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet

BMC Bioinformatics, 23 (1), pp. 139, 2022.

(Abstract | BibTeX)

Jeong, Kyowon; Kim, Jihyung; Kohlbacher, Oliver

Mass deconvolution of top-down mass spectrometry datasets by FLASHDeconv

Methods Mol. Biol., 2500 , pp. 145–157, 2022.

(Abstract | BibTeX)

Blum, Corinna; Baur, David; Achauer, Lars-Christian; Berens, Philipp; Biergans, Stephanie; Erb, Michael; Hömberg, Volker; Huang, Ziwei; Kohlbacher, Oliver; Liepert, Joachim; Lindig, Tobias; Lohmann, Gabriele; Macke, Jakob H; Römhild, Jörg; Rösinger-Hein, Christine; Zrenner, Brigitte; Ziemann, Ulf

Personalized neurorehabilitative precision medicine: from data to therapies (MWKNeuroReha) - a multi-centre prospective observational clinical trial to predict long-term outcome of patients with acute motor stroke

BMC Neurol, 22 (1), pp. 238, 2022.

(Abstract | BibTeX)

Bruns, Andreas; Benet-Pages, Anna; Eufinger, Jan; Graessner, Holm; Kohlbacher, Oliver; Molnár-Gábor, Fruzsina; Parker, Simon; Schickhardt, Christoph; Stegle, Oliver; Winkler, Eva

Consent Modules for Data Sharing via the German Human Genome-Phenome Archive (GHGA)

2022, (Funding: The GHGA consortium is funded by the German Research Foundation (DFG) within the framework of the National Research Data Infrastructure (NFDI).).

(Links | BibTeX)

Fluck, Juliane; Pigeot, Iris; Stegle, Oliver; Kohlbacher, Oliver; Förstner, Konrad; McHardy, Alice; Sure-Vetter, York

Rückmeldung der lebenswissenschaftlichen Nationalen Forschungsdateninfrastrukturen NFDI4Health, GHGA und NFDI4Microbiota zu den Positionen und Empfehlungen des Wissenschaftsrats – Digitalisierung und Datennutzung für Gesundheitsforschung und Versorgung

2022, (An die Vorsitzende des Wissenschaftsrats, Frau Professorin Dr. Dorothea Wagner, und alle Mitwirkenden der WR-Veröffentlichung 'Digitalisierung und Datennutzung für Gesundheitsforschung und Versorgung' : Rückmeldung der lebenswissenschaftlichen Nationalen Forschungsdateninfrastrukturen NFDI4Health, GHGA und NFDI4Microbiota zu den Positionen und Empfehlungen des Wissenschaftsrats).

(Links | BibTeX)

Buchert, Rebecca; Schenk, Elisabeth; Hentrich, Thomas; Weber, Nico; Rall, Katharina; Sturm, Marc; Kohlbacher, Oliver; Koch, André; Riess, Olaf; Brucker, Sara Y; Schulze-Hentrich, Julia M

Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome

Journal of Clinical Medicine, 11 (19), 2022, ISSN: 2077-0383.

(Abstract | Links | BibTeX)

Singh, J; Elhabashy, H; Muthukottiappan, P; Stepath, M; Eisenacher, M; Kohlbacher, O; Gieselmann, V; Winter, D

Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo

Nat Commun, 13 (1), pp. 6212, 2022.

(BibTeX)

Akgün, Mete; Pfeifer, Nico; Kohlbacher, Oliver

Efficient privacy-preserving whole-genome variant queries

Bioinform., 38 (8), pp. 2202–2210, 2022.

(Links | BibTeX)

-, Hans; Bahls, Thomas; Bialke, Martin; ü, J; Fegeler, Christian; ü, Julian Gr; Haarbrandt, Birger; Hampf, Christopher; Hoffmann, Wolfgang; Hund, Hauke; Kampf, Marvin O; Kapsner, Lorenz A; Kasprzak, Piotr; Kohlbacher, Oliver; Krefting, Dagmar; Mang, Jonathan; Marschollek, Michael; Mate, Sebastian; ü, Armin M; Prasser, Fabian; Sass, Julian; Semler, Sebastian C; Stenzhorn, Holger; Thun, Sylvia; Zenker, Sven; Eils, Roland

The COVID-19 Data Exchange Platform of the German University Medicine

é, Brigitte S; Weber, Patrick; Dhombres, Ferdinand; Grouin, Cyril; -, Jan; Pelayo, Sylvia; Pinna, Andrea; Rance, Bastien; Sacchi, Lucia; Ugon, Adrien; Benis, Arriel; Gallos, Parisis (Ed.): Challenges of Trustable AI and Added-Value on Health - Proceedings of MIE 2022, Medical Informatics Europe, Nice, France, May 27-30, 2022, pp. 674–678, IOS Press, 2022.

(Links | BibTeX)

de Herr, Marius Arruda Botelho; Graf, Michael; Placzek, Peter; König, Florian; Bötte, Felix; Stickel, Tyra; Hieber, David; Zimmermann, Lukas; Slupina, Michael; Mohr, Christopher; Biergans, Stephanie; Akgün, Mete; Pfeifer, Nico; Kohlbacher, Oliver

Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using the Personal Health Train (PHT-meDIC)

CoRR, abs/2212.03481 , 2022.

(Links | BibTeX)

Jan Eufinger Jan Korbel, Eva Winkler Oliver Kohlbacher ; Stegle, Oliver

Genomdaten FAIR und sicher teilen: Das Deutsche Humangenom-Phänom Archiv (GHGA) als Baustein der Nationalen Forschungsdateninfrastruktur

Bausteine Forschungsdatenmanagement, 2 , pp. 86-87, 2021.

(Links | BibTeX)

Leon Bichmann Shubham Gupta, George Rosenberger Leon Kuchenbecker Timo Sachsenberg Phil Ewels Oliver Alka Julianus Pfeuffer Oliver Kohlbacher ; Röst, Hannes

DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics

J. Proteome Res., 2021.

(Abstract | Links | BibTeX)

Immel, A; Key, F M; Szolek, A; Barquera, R; Robinson, M K; Harrison, G F; Palmer, W H; Spyrou, M A; Susat, J; Krause-Kyora, B; Bos, K I; Forrest, S; Hernández-Zaragoza, D I; Sauter, J; Solloch, U; Schmidt, A H; Schuenemann, V J; Reiter, E; Kairies, M S; Weiß, R; Arnold, S; Wahl, J; Hollenbach, J A; Kohlbacher, O; Herbig, A; Norman, P J; Krause, J

Analysis of genomic ĐNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes

Mol Biol Evol, 2021.

(Abstract | BibTeX)

Völkel, G; Fürstberger, A; Schwab, J D; Werle, S D; Ikonomi, N; Gscheidmeier, T; Kraus, J M; Groß, A; Holderried, M; Balig, J; Jobst, F; Kuhn, P; Kuhn, K A; Kohlbacher, O; Kaisers, U X; Seufferlein, T; Kestler, H A

Patient empowerment during the COVIĐ-19 pandemic: Ensuring safe and fast communication of test results

J Med Internet Res, 2021.

(Abstract | BibTeX)

Neidert, Ana Marcu; Leon Bichmann; Leon Kuchenbecker; Daniel Kowalewski; Lena Freudenmann; Linus Backert; Lena Mühlenbruch; Andras Szolek; Maren Lübke; Philipp Wagner; Tobias Engler; Sabine Matovina; Jian Wang; Mathias Hauri-Hohl; Roland Martin; Konstantina Kapolou; Juliane Walz; Julia Velz; Holger Moch; Luca Regli; Manuela Silginer; Michael Weller; Markus Löffler; Florian Erhard; Andreas Schlosser; Oliver Kohlbacher; Stefan Stevanović; Hans-Georg Rammensee; Marian

HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy

Journal for the ImmunoTherapy of Cancer, 9 (4), pp. e002071, 2021.

(Links | BibTeX)

Green, Anna; Elhabashy, Hadeer; Brock, Kelly; Maddamsetti, Rohan; Kohlbacher, Oliver; Marks, Debora S

Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences

Nat. Commun., 12 (1), pp. 1396, 2021.

(Abstract | Links | BibTeX)

Immel, Alexander; Pierini, Federica; Rinne, Christoph; Meadows, John; Barquera, Rodrigo; Szolek, András; Susat, Julian; Böhme, Lisa; Dose, Janina; Bonczarowska, Joanna; Drummer, Clara; Fuchs, Katharina; Ellinghaus, David; Kässens, Jan Christian; Furholt, Martin; Kohlbacher, Oliver; Schade-Lindig, Sabine; Franke, Andre; Schreiber, Stefan; Krause, Johannes; Müller, Johannes; Lenz, Tobias L; Nebel, Almut; Krause-Kyora, Ben

Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry

Communications Biology, 4 (1), pp. 113, 2021, ISSN: 2399-3642.

(Abstract | Links | BibTeX)

Kapsner, Lorenz A; Kampf, Marvin O; Seuchter, Susanne A; Gruendner, Julian; Gulden, Christian; Mate, Sebastian; Mang, Jonathan M; Schüttler, Christina; Deppenwiese, Noemi; Krause, Linda; Zöller, Daniela; Balig, Julien; Fuchs, Timo; Fischer, Patrick; Haverkamp, Christian; Holderried, Martin; Maye, Gerhard; Stenzhorn, Holger; Stolnicu, Ana; Storck, Michael; Storf, Holger; Zohner, Jochen; Kohlbacher, Oliver; Strzelczyk, Adam; Schüttler, Jürgen; Acker, Till; Boeker, Martin; Kaisers, Udo X; Kestler, Hans A; Prokosch, Hans-Ulrich

Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals during the COVID-19 Lockdown

Frontiers in Public Health, 8 , pp. 594117., 2021.

(Abstract | Links | BibTeX)

Arndt, Maike; Rurik, Marc; Drees, Alissa; Ahlers, Christian; Feldmann, Simon; Kohlbacher, Oliver; Fischer, Markus

Food Authentication: Determination of the geographical origin of almonds (Prunus dulcis MILL.) via near-infrared spectroscopy

Microchem. J., 160 (Part B), pp. 105702, 2021.

(Abstract | Links | BibTeX)

van van de Aschenbrenner AC Mouktaroudi M, Krämer Oestreich Antonakos Nuesch-Germano Gkizeli Bonaguro Reusch Baßler Saridaki Knoll Pecht Kapellos TS Doulou Kröger Herbert Holsten Horne Gemünd ID Rovina Agrawal Dahm Uelft Drews Lenkeit Bruse Gerretsen Gierlich Becker Händler Kraut Theis Mengiste De Domenico Schulte-Schrepping Seep Raabe Hoffmeister ToVinh Keitel Rieke Talevi Skowasch Aziz NA Pickkers Veerdonk FL Netea MG Schultze JL Kox Breteler MMB Nattermann Koutsoukou Giamarellos-Bourboulis EJ Ulas German COVID-19 Omics Initiative (DeCOI) B M N M K L N K M R T S C M L A N S K M A L N J J M K M H S E J L J C M V G V D P M J A T;

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients

Genome Med., 13 (1), pp. 7, 2021.

(Abstract | BibTeX)

Völkel, Gunnar; Fürstberger, Axel; Schwab, Julian D; Werle, Silke D; Ikonomi, Nansi; Gscheidmeier, Thomas; Kraus, Johann M; ß, Alexander Gro; Holderried, Martin; Balig, Julien; Jobst, Franz; Kuhn, Peter; Kuhn, Klaus A; Kohlbacher, Oliver; Kaisers, Udo X; Seufferlein, Thomas; Kestler, Hans A

Patient empowerment during the COVID-19 pandemic: Ensuring safe and fast communication of test results (Preprint)

Journal of Medical Internet Research, Forthcoming.

(Links | BibTeX)

Kittner, M; Lamping, M; Rieke, D T; Götze, J; Bajwa, B; Jelas, I; Rüter, G; Hautow, H; Sänger, M; Habibi, M; Zettwitz, M; de Bortoli, T; Ostermann, L; Ševa, J; Starlinger, J; Kohlbacher, O; Malek, N P; Keilholz, U; Leser, U

Annotation and initial evaluation of a large annotated German oncological corpus

JAMIA Open, 4 (2), 2021.

(Abstract | BibTeX)

Dai, C; Füllgrabe, A; Pfeuffer, J; Solovyeva, E M; Deng, J; Moreno, P; Kamatchinathan, S; Kundu, D J; George, N; Fexova, S; Grüning, B; Föll, M C; Griss, J; Vaudel, M; Audain, E; Locard-Paulet, M; Turewicz, M; Eisenacher, M; Uszkoreit, J; Bossche, Van Den T; Schwämmle, V; Webel, H; Schulze, S; Bouyssié, D; Jayaram, S; Duggineni, V K; Samaras, P; Wilhelm, M; Choi, M; Wang, M; Kohlbacher, O; Brazma, A; Papatheodorou, I; Bandeira, N; Deutsch, E W; Vizcaíno, J A; Bai, M; Sachsenberg, T; Levitsky, L I; Perez-Riverol, Y

A proteomics sample metadata representation for multiomics integration and big data analysis

Nat Commun, 12 (1), pp. 5854, 2021, ([DOI:hrefhttps://dx.doi.org/10.1038/nature1800310.1038/nature18003] [PubMed:hrefhttps://www.ncbi.nlm.nih.gov/pubmed/3166547931665479]).

(Abstract | BibTeX)

E, Netz; TMH, Dijkstra; T, Sachsenberg; L, Zimmermann; M, Walzer; T, Monecke; R, Ficner; O, Dybkov; H, Urlaub; O, Kohlbacher

OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS

Mol. Cell. Prot., 19 (12), pp. 2157-2168, 2020.

(Links | BibTeX)

Klare Juliane; Rurik, Marc; Rottmann Eric; Bollen Anke; Kohlbacher Oliver; Fischer Markus; Hackl Thomas

Determination of the Geographical Origin of Asparagus officinalis L. by 1H‐NMR‐Spectroscopy

J. Agricult. Food Chem., 68 (49), pp. 14353-14363, 2020.

(Abstract | Links | BibTeX)

Alexander Leitner Alexandre M.J.J. Bonvin, Christoph Borchers Robert Chalkley Julia Chamot-Rooke Colin Combe Jürgen Cox Meng-Qiu Dong Lutz Fischer Michael Götze Fabio Gozzo Albert Heck Michael Hoopmann Lan Huang Yasushi Ishihama Andrew Jones Nir Kalisman Oliver Kohlbacher Karl Mechtler Robert Moritz Eugen Netz Petr Novak Evgeniy Petrotchenko Andrej Sali Richard Scheltema Carla Schmidt David Schriemer Andrea Sinz Frank Sobott Florian Stengel Konstantinos Thalassinos Henning Urlaub Rosa Viner Juan Vizcaino Marc Wilkins Juri Rappsilber H J W C J R R R L A A R

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Structure, 28 (11), pp. 1259-1268, 2020.

(Abstract | Links | BibTeX)

Abbas, Syed Saiden; Dijkstra, Tjeerd M H

Detection and stage classification of Plasmodium falciparum from images of Giemsa stained thin blood films using random forest classifiers

Diagnostic Pathology, 15 (130), 2020.

(Abstract | Links | BibTeX)

Schulte-Schrepping, J; Reusch, N; Paclik, D; Ba?ler, K; Schlickeiser, S; Zhang, B; Kr?mer, B; Krammer, T; Brumhard, S; Bonaguro, L; Domenico, De E; Wendisch, D; Grasshoff, M; Kapellos, T S; Beckstette, M; Pecht, T; Saglam, A; Dietrich, O; Mei, H E; Schulz, A R; Conrad, C; Kunkel, D; Vafadarnejad, E; Xu, C J; Horne, A; Herbert, M; Drews, A; Thibeault, C; Pfeiffer, M; Hippenstiel, S; Hocke, A; M?ller-Redetzky, H; Heim, K M; Machleidt, F; Uhrig, A; de Jarcy, Bosquillon L; J?rgens, L; Stegemann, M; Gl?senkamp, C R; Volk, H D; Goffinet, C; Landthaler, M; Wyler, E; Georg, P; Schneider, M; Dang-Heine, C; Neuwinger, N; Kappert, K; Tauber, R; Corman, V; Raabe, J; Kaiser, K M; Vinh, M T; Rieke, G; Meisel, C; Ulas, T; Becker, M; Geffers, R; Witzenrath, M; Drosten, C; Suttorp, N; von Kalle, C; Kurth, F; H?ndler, K; Schultze, J L; Aschenbrenner, A C; Li, Y; Nattermann, J; Sawitzki, B; Saliba, A E; Sander, L E; Angelov, A; Bals, R; Bartholom?us, A; Becker, A; Bezdan, D; Bonifacio, E; Bork, P; Clavel, T; Colome-Tatche, M; Diefenbach, A; Dilthey, A; Fischer, N; F?rstner, K; Frick, J S; Gagneur, J; Goesmann, A; Hain, T; Hummel, M; Janssen, S; Kalinowski, J; Kallies, R; Kehr, B; Keller, A; Kim-Hellmuth, S; Klein, C; Kohlbacher, O; Korbel, J O; Kurth, I; Landthaler, M; Li, Y; Ludwig, K; Makarewicz, O; Marz, M; McHardy, A; Mertes, C; N?then, M; N?rnberg, P; Ohler, U; Ossowski, S; Overmann, J; Peter, S; Pfeffer, K; Poetsch, A R; P?hler, A; Rajewsky, N; Ralser, M; Rie?, O; Ripke, S; da Rocha, Nunes U; Rosenstiel, P; Saliba, A E; Sander, L E; Sawitzki, B; Schiffer, P; Schulte, E C; Schultze, J L; Sczyrba, A; Stegle, O; Stoye, J; Theis, F; Vehreschild, J; Vogel, J; von Kleist, M; Walker, A; Walter, J; Wieczorek, D; Ziebuhr, J

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment

Cell, 182 (6), pp. 1419-1440.e23, 2020.

(Abstract | Links | BibTeX)

Nelde, A; Bilich, T; Heitmann, J S; Maringer, Y; Salih, H R; Roerden, M; L?bke, M; Bauer, J; Rieth, J; Wacker, M; Peter, A; H?rber, S; Traenkle, B; Kaiser, P D; Rothbauer, U; Becker, M; Junker, D; Krause, G; Strengert, M; Schneiderhan-Marra, N; Templin, M F; Joos, T O; Kowalewski, D J; Stos-Zweifel, V; Fehr, M; Rabsteyn, A; Mirakaj, V; Karbach, J; J?ger, E; Graf, M; Gruber, L C; Rachfalski, D; Preu?, B; Hagelstein, I; M?rklin, M; Bakchoul, T; Gouttefangeas, C; Kohlbacher, O; Klein, R; Stevanovi?, S; Rammensee, H G; Walz, J S

SARS-CoV-2-derived peptides define heterologous and COVIĐ-19-induced Ŧ cell recognition

Nat Immunol, 2020.

(BibTeX)

Nothias, L F; Petras, D; Schmid, R; D?hrkop, K; Rainer, J; Sarvepalli, A; Protsyuk, I; Ernst, M; Tsugawa, H; Fleischauer, M; Aicheler, F; Aksenov, A A; Alka, O; Allard, P M; Barsch, A; Cachet, X; Caraballo-Rodriguez, A M; Silva, Da R R; Dang, T; Garg, N; Gauglitz, J M; Gurevich, A; Isaac, G; Jarmusch, A K; Kamen?k, Z; Kang, K B; Kessler, N; Koester, I; Korf, A; Gouellec, Le A; Ludwig, M; H, Martin C; McCall, L I; McSayles, J; Meyer, S W; Mohimani, H; Morsy, M; Moyne, O; Neumann, S; Neuweger, H; Nguyen, N H; Nothias-Esposito, M; Paolini, J; Phelan, V V; Pluskal, T; Quinn, R A; Rogers, S; Shrestha, B; Tripathi, A; van der Hooft, J J J; Vargas, F; Weldon, K C; Witting, M; Yang, H; Zhang, Z; Zubeil, F; Kohlbacher, O; B?cker, S; Alexandrov, T; Bandeira, N; Wang, M; Dorrestein, P C

Feature-based molecular networking in the GNPS analysis environment

Nat Methods, 17 (9), pp. 905–908, 2020.

(BibTeX)

Identifying Đisease-Causing Mutations with Privacy Protection

Bioinformatics, 2020.

(Abstract | BibTeX)

Gleim, L C; Karim, M R; Zimmermann, L; Kohlbacher, O; Stenzhorn, H; Decker, S; Beyan, O

Enabling ad-hoc reuse of private data repositories through schema extraction

J Biomed Semantics, 11 (1), pp. 6, 2020.

(Abstract | BibTeX)

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