Publications

336 entries « 1 of 7 »

Abbas, Syed Saiden; Dijkstra, Tjeerd M H

Detection and stage classification of Plasmodium falciparum from images of Giemsa stained thin blood films using random forest classifiers

Diagnostic Pathology, 15 (130), 2020.

(Abstract | Links | BibTeX)

Nelde, A; Bilich, T; Heitmann, J S; Maringer, Y; Salih, H R; Roerden, M; L?bke, M; Bauer, J; Rieth, J; Wacker, M; Peter, A; H?rber, S; Traenkle, B; Kaiser, P D; Rothbauer, U; Becker, M; Junker, D; Krause, G; Strengert, M; Schneiderhan-Marra, N; Templin, M F; Joos, T O; Kowalewski, D J; Stos-Zweifel, V; Fehr, M; Rabsteyn, A; Mirakaj, V; Karbach, J; J?ger, E; Graf, M; Gruber, L C; Rachfalski, D; Preu?, B; Hagelstein, I; M?rklin, M; Bakchoul, T; Gouttefangeas, C; Kohlbacher, O; Klein, R; Stevanovi?, S; Rammensee, H G; Walz, J S

SARS-CoV-2-derived peptides define heterologous and COVIĐ-19-induced Ŧ cell recognition

Nat Immunol, 2020.

(BibTeX)

Nothias, L F; Petras, D; Schmid, R; D?hrkop, K; Rainer, J; Sarvepalli, A; Protsyuk, I; Ernst, M; Tsugawa, H; Fleischauer, M; Aicheler, F; Aksenov, A A; Alka, O; Allard, P M; Barsch, A; Cachet, X; Caraballo-Rodriguez, A M; Silva, Da R R; Dang, T; Garg, N; Gauglitz, J M; Gurevich, A; Isaac, G; Jarmusch, A K; Kamen?k, Z; Kang, K B; Kessler, N; Koester, I; Korf, A; Gouellec, Le A; Ludwig, M; H, Martin C; McCall, L I; McSayles, J; Meyer, S W; Mohimani, H; Morsy, M; Moyne, O; Neumann, S; Neuweger, H; Nguyen, N H; Nothias-Esposito, M; Paolini, J; Phelan, V V; Pluskal, T; Quinn, R A; Rogers, S; Shrestha, B; Tripathi, A; van der Hooft, J J J; Vargas, F; Weldon, K C; Witting, M; Yang, H; Zhang, Z; Zubeil, F; Kohlbacher, O; B?cker, S; Alexandrov, T; Bandeira, N; Wang, M; Dorrestein, P C

Feature-based molecular networking in the GNPS analysis environment

Nat Methods, 17 (9), pp. 905–908, 2020.

(BibTeX)

Identifying Đisease-Causing Mutations with Privacy Protection

Bioinformatics, 2020.

(Abstract | BibTeX)

Gleim, L C; Karim, M R; Zimmermann, L; Kohlbacher, O; Stenzhorn, H; Decker, S; Beyan, O

Enabling ad-hoc reuse of private data repositories through schema extraction

J Biomed Semantics, 11 (1), pp. 6, 2020.

(Abstract | BibTeX)

Starke, R; Oliphant, K; Jehmlich, N; Sch?pe, S S; Sachsenberg, T; Kohlbacher, O; Allen-Vercoe, E; von Bergen, M

Corrigendum to Ŧracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities

J Proteomics, 224 , pp. 103829, 2020.

(BibTeX)

Scheidt, T; Alka, O; Gonczarowska-Jorge, H; Gruber, W; Rathje, F; DellÁica, M; Rurik, M; Kohlbacher, O; Zahedi, R P; Aberger, F; Huber, C G

Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells

Cell Commun. Signal, 18 (1), pp. 99, 2020.

(Abstract | BibTeX)

Samonig, L; Loipetzberger, A; Bl?chl, C; Rurik, M; Kohlbacher, O; Aberger, F; Huber, C G

Proteins and Molecular Pathways Relevant for the Malignant Properties of Ŧumor-Initiating Pancreatic Cancer Cells

Cells, 9 (6), 2020.

(Abstract | BibTeX)

Starke, R; Oliphant, K; Jehmlich, N; Sch?pe, S S; Sachsenberg, T; Kohlbacher, O; Allen-Vercoe, E; von Bergen, M

Ŧracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities

J Proteomics, 222 , pp. 103791, 2020.

(Abstract | BibTeX)

Pfeuffer Julianus; Sachsenberg, Timo; Dijkstra Tjeerd Serang Oliver; Reinert Knut; Kohlbacher Oliver M H ;

EPIFANY - A method for efficient high-confidence protein inference

J. Proteome Res., 2020.

(Abstract | Links | BibTeX)

Hentrich, T; Koch, A; Weber, N; Kilzheimer, A; Burkhardt, S; Rall, K; Casadei, N; Kohlbacher, O; Riess, O; Schulze-Hentrich, JM; Brucker, SY

The endometrial transcription landscape of MRKH syndrome

bioRxiv, 2020.

(Abstract | Links | BibTeX)

Voelkel, Gunnar; Fuerstberger, Axel; Schwab, Julian D; Kuehlwein, Silke D; Gscheidmeier, Thomas; Kraus, Johann M; Gross, Alexander; Kohlmayer, Florian; Kuhn, Peter; Kuhn, Klaus A; Kohlbacher, Oliver; Seufferlein, Thomas; Kestler, Hans A

A secure and rapid query-software for COVID-19 test results that can easily be integrated into the clinical workflow to avoid communication overload

medRxiv, 2020.

(Abstract | Links | BibTeX)

Jeong, K; Kim, J; Gaikwad, M; Hidayah, S N; Heikaus, L; Schl?ter, H; Kohlbacher, O

FLASĦĐeconv: Ultrafast, Ħigh-Quality Feature Đeconvolution for Ŧop-Đown Proteomics

Cell Syst, 10 (2), pp. 213–218, 2020.

(Abstract | BibTeX)

Wein, S; Andrews, B; Sachsenberg, T; Santos-Rosa, H; Kohlbacher, O; Kouzarides, T; Garcia, B A; Weisser, H

A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry

Nat Commun, 11 (1), pp. 926, 2020.

(Abstract | BibTeX)

Schulte-Schrepping, J; Reusch, N; Paclik, D; Ba?ler, K; Schlickeiser, S; Zhang, B; Kr?mer, B; Krammer, T; Brumhard, S; Bonaguro, L; Domenico, De E; Wendisch, D; Grasshoff, M; Kapellos, T S; Beckstette, M; Pecht, T; Saglam, A; Dietrich, O; Mei, H E; Schulz, A R; Conrad, C; Kunkel, D; Vafadarnejad, E; Xu, C J; Horne, A; Herbert, M; Drews, A; Thibeault, C; Pfeiffer, M; Hippenstiel, S; Hocke, A; M?ller-Redetzky, H; Heim, K M; Machleidt, F; Uhrig, A; de Jarcy, Bosquillon L; J?rgens, L; Stegemann, M; Gl?senkamp, C R; Volk, H D; Goffinet, C; Landthaler, M; Wyler, E; Georg, P; Schneider, M; Dang-Heine, C; Neuwinger, N; Kappert, K; Tauber, R; Corman, V; Raabe, J; Kaiser, K M; Vinh, M T; Rieke, G; Meisel, C; Ulas, T; Becker, M; Geffers, R; Witzenrath, M; Drosten, C; Suttorp, N; von Kalle, C; Kurth, F; H?ndler, K; Schultze, J L; Aschenbrenner, A C; Li, Y; Nattermann, J; Sawitzki, B; Saliba, A E; Sander, L E; Angelov, A; Bals, R; Bartholom?us, A; Becker, A; Bezdan, D; Bonifacio, E; Bork, P; Clavel, T; Colome-Tatche, M; Diefenbach, A; Dilthey, A; Fischer, N; F?rstner, K; Frick, J S; Gagneur, J; Goesmann, A; Hain, T; Hummel, M; Janssen, S; Kalinowski, J; Kallies, R; Kehr, B; Keller, A; Kim-Hellmuth, S; Klein, C; Kohlbacher, O; Korbel, J O; Kurth, I; Landthaler, M; Li, Y; Ludwig, K; Makarewicz, O; Marz, M; McHardy, A; Mertes, C; N?then, M; N?rnberg, P; Ohler, U; Ossowski, S; Overmann, J; Peter, S; Pfeffer, K; Poetsch, A R; P?hler, A; Rajewsky, N; Ralser, M; Rie?, O; Ripke, S; da Rocha, Nunes U; Rosenstiel, P; Saliba, A E; Sander, L E; Sawitzki, B; Schiffer, P; Schulte, E C; Schultze, J L; Sczyrba, A; Stegle, O; Stoye, J; Theis, F; Vehreschild, J; Vogel, J; von Kleist, M; Walker, A; Walter, J; Wieczorek, D; Ziebuhr, J

Severe COVIĐ-19 Is Marked by a Đysregulated Myeloid Cell Compartment

Cell, 182 (6), pp. 1419–1440, 2020.

(BibTeX)

Wibberg, D; Batut, B; Belmann, P; Blom, J; Glöckner, FO; Grüning, B; Hoffmann, N; Kleinbölting, N; Rahn, R; Rey, M; Scholz, U; Sharan, M; Tauch, A; Trojahn, U; Usadel, B; Kohlbacher, O

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR [version 2; peer review: 2 approved]

F1000Research, 8 (1877), 2020.

(Links | BibTeX)

Kutuzova, Svetlana; Colaianni, Pasquale; Röst, Hannes; Sachsenberg, Timo; Alka, Oliver; Kohlbacher, Oliver; Burla, Bo; Torta, Federico; Schrübbers, Lars; Kristensen, Mette; Nielsen, Lars; Herrgård, Markus J; McCloskey, Douglas

SmartPeak automates targeted and quantitative metabolomics data processing

2020.

(BibTeX)

Lichao Zhang Sebastian Winkler, Fabian Schlottmann Oliver Kohlbacher Josh Elias Jan Skotheim Jennifer Ewald P E M C

Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast

Front. Cell Dev. Biol., 2019.

(Abstract | Links | BibTeX)

L, Schneider; T, Kehl; K, Thedinga; NL, Grammes; C, Backes; C, Mohr; B, Schubert; K, Lenhof; N, Gerstner; AD, Hartkopf; M, Wallwiener; O, Kohlbacher; A, Keller; E, Meese; N, Graf; HP, Lenhof

ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification.

Bioinformatics, 35 (24), pp. 5171-5181, 2019.

(Abstract | Links | BibTeX)

Lederer, S; Dijkstra, ; T.M.H., ; Heskes, T

Additive Dose Response Models: Defining Synergy

Frontiers of Pharmacology, 10 (1284), 2019.

(Abstract | Links | BibTeX)

B, Richter; M, Rurik; S, Gurk; O, Kohlbacher; M, Fischer

Food monitoring: Screening of the geographical origin of white asparagus using FT-NIR and machine learning

Food Control, 104 , pp. 318-325, 2019.

(Abstract | Links | BibTeX)

S, Choobdar; ME, Ahsen; J, Crawford; M, Tomasoni; T, Fang; D, Lamparter; J, Lin; B, Hescott; X, Hu; andNatoli T, Mercer J; R, Narayan; Consortium, DREAM Module Identification Challenge; A, Subramanian; JD, Zhang; G, Stolovitzky; Z, Kutalik; K, Lage; DK, Slonim; J, Saez-Rodriguez; LJ, Cowen; S, Bergmann; D, Marbach

Assessment of network module identification across complex diseases

Nature Methods, 16 (9), pp. 843-852, 2019.

(Abstract | Links | BibTeX)

S, Fillinger; de la L, Garza; A, Peltzer; O, Kohlbacher; S, Nahnsen

Challenges of big data integration in the life sciences

Analytical and Bioanalytical Chemistry, 411 (26), pp. 6791–6800, 2019.

(Abstract | Links | BibTeX)

van den Brand, J A J G; Dijkstra, T M H; J., Wetzels; Stengel, B; Metzger, M; Blankestijn, P J; Heerspink, Lambers; H.J., ; R.T., Gansevoort

Predicting kidney failure from longitudinal kidney function trajectory: a comparison of models

PLOS One, 14 (5), 2019.

(Abstract | Links | BibTeX)

Bilich, Tatjana; Nelde, Annika; Bichmann, Leon; Roerden, Malte; Salih, Helmut R; Kowalewski, Daniel J; Schuster, Heiko; Tsou, Chih-Chiang; Marcu, Ana; Neidert, Marian C; Lübke, Maren; Rieth, Jonas; Schemionek, Mirle; Brümmendorf, Tim H; Vucinic, Vladan; Niederwieser, Dietger; Bauer, Jens; Märklin, Melanie; Peper, Janet K; Klein, Reinhild; Kanz, Lothar; Rammensee, Hans-Georg; Stevanovic, Stefan; Walz, Juliane S

The HLA ligandome landscape of chronic myeloid leukemia delineates novel T-cell epitopes for immunotherapy

Blood, 133 (6), pp. 550-565, 2019.

(Abstract | Links | BibTeX)

Löffler, Markus W; Mohr, Christopher; Bichmann, Leon; Freudenmann, Lena Katharina; Walzer, Mathias; Schroeder, Christopher W; Trautwein, Nico; Hilke, Franz J; Zinser, Raphael S; Mühlenbruch, Lena; Kowalewski, Daniel J; Schuster, Heiko; Sturm, Marc; Matthes, Jakob; Riess, Olaf; Czemmel, Stefan; Nahnsen, Sven; Königsrainer, Ingmar; Thiel, Karolin; Nadalin, Silvio; Beckert, Stefan; Bösmüller, Hans; Fend, Falko; Velic, Ana; Macek, Boris; Haen, Sebastian P; Buonaguro, Luigi; Kohlbacher, Oliver; Königsrainer, Alfred; Rammensee, Hans-Georg; Consortium, The HepaVac

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma

Genome Med., Forthcoming.

(Abstract | BibTeX)

Ali, Muhammed; Foldvari, Zsofia; Giannakopoulou, Eirini; Böschen, Maxi-Lu; Strønen, Erlend; Yang, Weiwen; Toebes, Mireille; Schubert, Benjamin; Kohlbacher, Oliver; Schumacher, Ton N; Olweus, Johanna

Induction Of Neoantigen Reactive T Cells From Healthy Donors

Nat. Protocols, Forthcoming.

(Abstract | Links | BibTeX)

Alka, Oliver; Sachsenberg, Timo; Bichmann, Leon; Pfeuffer, Julianus; Weisser, Hendrik; Wein, Samuel; Netz, Eugen; Rurik, Marc; Kohlbacher, Oliver; Rost, Hannes

OpenMS for open source analysis of mass spectrometric data

PeerJ Preprints, 7 , pp. e27766v1, 2019, ISSN: 2167-9843.

(Links | BibTeX)

Cain, Nicolas; Alka, Oliver; Segelke, Torben; von Wuthenau, Kristian; Kohlbacher, Oliver; Fischer, Markus

Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS

Food Chemistry, 298 , pp. 125013, 2019, ISSN: 0308-8146.

(Abstract | Links | BibTeX)

Licha, David; Vidali, Silvia; Aminzadeh-Gohari, Sepideh; Alka, Oliver; Breitkreuz, Leander; Kohlbacher, Oliver; Reischl, Roland J; Feichtinger, René G; Kofler, Barbara; Huber, Christian G

Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models

International Journal of Molecular Sciences, 20 (16), 2019, ISSN: 1422-0067.

(Abstract | Links | BibTeX)

Bichmann, Leon; Nelde, Annika; Ghosh, Michael; Heumos, Lukas; Mohr, Christopher; Peltzer, Alexander; Kuchenbecker, Leon; Sachsenberg, Timo; Walz, Juliane S; Stevanović, Stefan; Rammensee, Hans-Georg; Kohlbacher, Oliver

MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics

Journal of Proteome Research, 18 (11), pp. 3876-3884, 2019, (PMID: 31589052).

(Links | BibTeX)

Sürün, Bilge; Schärfe, Charlotta P I; Divine, Mathew R; Heinrich, Julian; Toussaint, Nora C; Zimmermann, Lukas; Beha, Janina; Kohlbacher, Oliver

ClinVAP: A reporting strategy from variants to therapeutic options

Bioinformatics, 2019, ISSN: 1367-4803, (btz924).

(Abstract | Links | BibTeX)

Lübke, Maren; Spalt, Stefanie; Kowalewski, Daniel J; Zimmermann, Cosima; Bauersfeld, Liane; Nelde, Annika; Bichmann, Leon; Marcu, Ana; Peper, Janet Kerstin; Kohlbacher, Oliver; Walz, Juliane S; Le-Trilling, Vu Thuy Khanh; Hengel, Hartmut; Rammensee, Hans-Georg; Stevanović, Stefan; Halenius, Anne

Identification of HCMV-derived T cell epitopes in seropositive individuals through viral deletion models

The Journal of Experimental Medicine, 217 (3), 2019, ISSN: 0022-1007, (e20191164).

(Abstract | Links | BibTeX)

Creydt, Marina; Hudzik, Daria; Rurik, Marc; Kohlbacher, Oliver; Fischer, Markus

Food Authentication: Small Molecule Profiling as a Tool for the Geographic Discrimination of German White Asparagus

J. Agric. Food Chem., 66 (50), pp. 13328-13339, 2018.

(Abstract | Links | BibTeX)

Rehm, Markus; Apweiler, Rolf; Beissbarth, Tim; Berthold, Michael; Blüthgen, Nils; Burmeister, Yvonne; Dammann, Olaf; Deutsch, Andreas; Feuerhake, Friederike; Franke, Andre; Hasenauer, Jan; Hoffmann, Steve; Höfer, Thomas; Jansen, Peter; Kaderali, Lars; Klingmüller, Ursula; Koch, Ina; Kohlbacher, Oliver; Kuepfer, Lars; Lammert, Frank; Maier, Dieter; Pfeifer, Nico; Radde, Nicole; Roeder, Ingo; Saez-Rodriguez, Julio; Sax, Ulrich; Schmeck, Bernd; Schuppert, Andreas; Seilheimer, Bernd; Theis, Fabian; Vera-Gonzáles, Julio; Wolkenhauer, Olaf

Whither Systems Medicine?

Exp. Mol. Med., 50 (3), pp. e453, 2018.

(Abstract | Links | BibTeX)

Schubert, Benjamin; Schärfe, Charlotta; Dönnes, Pierre; Hopf, Thomas; Marks, Debora; Kohlbacher, Oliver

Population-specific design of de-immunized protein biotherapeutics

PLoS Comput Biol, 14 (3), pp. (3):e1005983, 2018.

(Abstract | Links | BibTeX)

Mohr, Christopher; Friedrich, Andreas; Wojnar, David; Kenar, Erhan; Polatkan, Aydin-Can; Codrea, Marius Cosmin; Czemmel, Stefan; Kohlbacher, Oliver; Nahnsen, Sven

qPortal: A platform for data-driven biomedical research

PLoS ONE, 13 (1), pp. e0191603, 2018.

(Abstract | Links | BibTeX)

Choobdar, Sarvenaz; Ahsen, Mehmet E; Crawford, Jake; Tomasoni, Mattia; Lamparter, David; Lin, Junyuan; Hescott, Benjamin; Hu, Xiaozhe; Mercer, Johnathan; Natoli, Ted; Narayan, Rajiv; Aravind, ; Subramanian, ; Stolovitzky, Gustavo; Kutalik, Zoltán; Lage, Kasper; Slonim, Donna K; Saez-Rodriguez, Julio; Cowen, Lenore J; Bergmann, Sven; Marbach, Daniel

Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases

bioRxiv, 2018.

(Abstract | Links | BibTeX)

Brunk, Elizabeth; Sahoo, Swagatika; Zielinski, Daniel C; Altunkaya, Ali; Dräger, Andreas; Mih, Nathan; Gatto, Francesco; Nilsson, Avlant; Gonzalez, German Andres Preciat; Aurich, Maike Kathrin; Prlić, Andreas; Sastry, Anand; Danielsdottir, Anna D; Heinken, Almut; Noronha, Alberto; Rose, Peter W; Burley, Stephen K; Fleming, Ronan M T; Nielsen, Jens; Thiele, Ines; Palsson, Bernhard O

Recon3D enables a three-dimensional view of gene variation in human metabolism

Nature Biotechnology, 2018.

(Abstract | Links | BibTeX)

Thijssen, Bram; Dijkstra, Tjeerd M H; Heskes, Tom; Wessels, Lodewyk F A

Bayesian data integration for quantifying the contribution of diverse measurements to parameter estimates

Bioinformatics, 34 (5), pp. 803-811, 2018.

(Abstract | Links | BibTeX)

Lederer, Simone; Dijkstra, Tjeerd M H; Heskes, Tom

Additive Dose Response Models: Explicit Formulation and the Loewe Additivity Consistency Condition

Frontiers in Pharmacology, 9 (31), 2018.

(Abstract | Links | BibTeX)

Löffler, Markus W; Kowalewski, Daniel J; Backert, Linus; Bernhardt, Jörg; Adam, Patrick; Schuster, Heiko; Dengler, Florian; Backes, Daniel; Kopp, Hans-Georg; Beckert, Stefan; Wagner, Silvia; Königsrainer, Ingmar; Kohlbacher, Oliver; Kanz, Lothar; Königsrainer, Alfred; Rammensee, Hans-Georg; Stevanovic, Stefan; Haen, Sebastian P

Mapping the HLA ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation

Cancer Res., 78 (16), pp. 4627-4641, 2018.

(Abstract | Links | BibTeX)

Kahles, André; Lehmann, Kjong-Van; Toussaint, Nora C; Hüser, Matthias; Stark, Stefan; Sachsenberg, Timo; Stegle, Oliver; Kohlbacher, Oliver; Sander, Chris; Network, Gunnar TCGA PanCanAtlas; Rätsch,

Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

Cancer Cell, 34 (2), pp. 211-224, 2018.

(Abstract | Links | BibTeX)

Fröhlich, Holger; Balling, Rudi; Beerenwinkel, Niko; Kohlbacher, Oliver; Kumar, Santosh; Lengauer, Thomas; Maathuis, Marloes; Moreau, Yves; Murphy, Susan; Przytycka, Teresa; Röst, Hannes; Rebhan, Michael; Schuppert, Andreas; Schwab, Matthias; Spang, Rainer; Stekhoven, Daniel; Sun, Jimeng; Ziemek, Daniel; Zupan, Blaz

From Hype to Reality: Data Science enabling Personalized Medicine

BMC Medicine, 16 , pp. 150, 2018.

(Abstract | Links | BibTeX)

Prasser, Fabian; Kohlbacher, Oliver; Mansmann, Ulrich; Bauer, Bernhard; Kuhn, Klaus A

Data Integration for Future Medicine (DIFUTURE) - An Architectural and Methodological Overview

Methods Inf Med, 57 (S01), pp. e57-r65, 2018.

(Abstract | Links | BibTeX)

Gleim, Lars Christoph; Karim, Md. Rezaul; Zimmermann, Lukas; Stenzhorn, Holger; Decker, Stefan; Beyan, Oya

Schema Extraction for Privacy Preserving Processing of Sensitive Data

MEPDaW-SeWeBMeDA-SWeTI 2018 Joint Proceedings of MEPDaW, SeWeBMeDA and SWeTI 2018, 2112 , CEUR Workshop Proceedings 2018.

(Abstract | Links | BibTeX)

Domingo-Calap, Pilar; Schubert, Benjamin; Joly, Mélanie; Solis, Morgane; Untrau, Meiggie; Carapito, Raphael; Georgel, Philippe; Caillard, Sophie; Fafi-Kremer, Samira; Paul, Nicodème; Kohlbacher, Oliver; González-Candelas, Fernando; Bahram, Seiamak

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides

PLoS Pathogens, 14 (10), pp. e1007368, 2018.

(Abstract | Links | BibTeX)

Deutsch, Eric; Perez-Riverol, Yasset; Chalkley, Robert; Wilhelm, Mathias; Tate, Stephen; Sachsenberg, Timo; Walzer, Mathias; Käll, Lukas; Delanghe, Bernard; Böcker, Sebastian; Schymanski, Emma; Wilmes, Paul; Dorfer, Viktoria; Kuster, Bernhard; Volders, Pieter-Jan; Jehmlich, Nico; Vissers, Johannes; Wolan, Dennis; Wang, Ana; Mendoza, Luis; Shofstahl, Jim; Dowsey, Andrew; Griss, Johannes; Salek, Reza; Neumann, Steffen; Binz, Pierre-Alain; Lam, Henry; Vizcaíno, Juan; Bandeira, Nuno; Röst, Hannes

Expanding the use of spectral libraries in proteomics

Journal of Proteome Research, 2018.

(Abstract | Links | BibTeX)

Karim, Md. Rezaul; Nguyen, Binh-Phi; Zimmermann, Lukas; Kirsten, Toralf; Löbe, Matthias; Meineke, Frank; Stenzhorn, Holger; Kohlbacher, Oliver; Decker, Stefan; Beyan, Oya (Ed.)

A Distributed Analytics Platform to Execute FHIR based Phenotyping Algorithms

2018.

(BibTeX)

Wein, Samuel; Andrews, Byron; Sachsenberg, Timo; Santos-Rosa, Helena; Kohlbacher, Oliver; Kouzarides, Tony; Garcia, Benjamin A; Weisser, Hendrik

A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry

bioRxiv, 2018.

(Abstract | Links | BibTeX)

336 entries « 1 of 7 »

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