Applied Bioinformatics
University of Tübingen
Analysis of omics data (genomics, proteomics, metabolomics), structural bioinformatics and computational immunomics, with a reputation for high-quality research software.
Applied & Translational Bioinformatics · Tübingen
From mass spectrometry, immunomics and structural bioinformatics to national research data platforms such as GHGA, DNPM and PrivateAIM.
Led by Prof. Dr. Oliver KohlbacherWho we are
Founded in 2000 and led by Prof. Dr. Oliver Kohlbacher. Both groups work side by side in the Tübingen AI Research Building.
University of Tübingen
Analysis of omics data (genomics, proteomics, metabolomics), structural bioinformatics and computational immunomics, with a reputation for high-quality research software.
University Hospital Tübingen
At the intersection of medical informatics and bioinformatics. As part of DIFUTURE, the group builds Data Integration Centers for the German Medical Informatics Initiative.
What we work on
MHC ligandomics, HLA typing and neoepitope discovery from mass spectrometry and NGS data.
Algorithms and the OpenMS platform for high-throughput proteomics and metabolomics.
Data integration for molecular tumor boards across 26 university hospitals (DNPM).
Computer-aided drug design, cheminformatics and prediction of protein-protein complexes.
Bridging molecular and clinical data, e.g. federated, privacy-preserving analytics with FLAME.
Projects & software
Data Integration Platform of the German Network for Personalized Medicine.
Repository ↗Federated learning and analyses in medicine, the open-source core of PrivateAIM.
Repository ↗Python framework for computational immunomics.
Repository ↗Open-source software for mass spectrometry analysis.
Repository ↗Output
Pakkir Shah, A., Walter, A., Ottosson, F., Russo, F., Navarro-Diaz, M., Boldt, J., Kalinski, J., Kontou, E., Elofson, J. & Polyzois, A.
Welten, S., Arruda Botelho Herr, M., Hempel, L., Hieber, D., Placzek, P., Graf, M., Weber, S., Neumann, L., Jugl, M., Tirpitz, L., Kindermann, K., Geisler, S., Silva Santos, L., Decker, S., Pfeifer, N., Kohlbacher, O. & Kirsten, T.
Barquera, R., vez, O., gele, K., rez-Ramallo, P., ndez-Zaragoza, D., Szolek, A., Rohrlach, A., Librado, P., Childebayeva, A., Bianco, R., Penman, B., a-Alonzo, V., Lucas, M., Lara-Riegos, J., Moo-Mezeta, M., Torres-Romero, J., Roberts, P., Kohlbacher, O., Warinner, C. & Krause, J.
Bayas, A., Mansmann, U., n, B., Hoffmann, V., Berthele, A., hlau, M., Kowarik, M., Krumbholz, M., Senel, M., Steuerwald, V., Naumann, M., Hartberger, J., Kerschensteiner, M., Oswald, E., Ruschil, C., Ziemann, U., Tumani, H., Vardakas, I., Albashiti, F., Kramer, F., Soto-Rey, I., Spengler, H., Mayer, G., Kestler, H., Kohlbacher, O., Hagedorn, M., Boeker, M., Kuhn, K., Buchka, S., Kohlmayer, F., Kirschke, J., Behrens, L., Zimmermann, H., Bender, B., Sollmann, N., Havla, J., Hemmer, B., Berlis, A., Wiestler, B., mpfel, T., Seelos, K., nschede, J., Kemmner, R., Beer, M., Dietrich, J. & Schaller, J.
People
Head of the labProf. Dr. Oliver KohlbacherDirector, Institute for Translational Bioinformatics, University Medical Center Tübingen. ISCB Fellow.View profile →
Famke BäuerlePhD Student
Eckart BindewaldStaff Scientist
Jonas BollgrünSoftware Developer
Susanne BraeuerProject Manager
Lucien ClinResearcher
Tjeerd DijkstraPostdoc
Zachariah HenselerData Steward
Marius HerrResearcher
David HieberResearcher
Kyowon JeongPostdoc
Camill KaipfResearcher
Léon KuchenbeckerTechnical Lead GHGA
Nadine S. KurzPostDoc
Julia LeimeisterScientific Project Manager
Tom D. MüllerPhD Student
Andreas NagelSystem Administrator
Matteo PilzPhD Student
Peter PlaczekResearcher
Alexander RöhlPhD Student
Timo SachsenbergStaff Scientist
Dzodzoenyenye Adjowa SenanouAIMS–Tübingen Research Fellow
Bilge SürünPostDoc
Haoran SunPhD Student
Thorsten PabstAssistant
Claudia WalterAssistant
Sam Wein (they/them)PostDocVisit us
