Software

Software Packages

OpenMS

Open-source software for mass spectrometry analysis.
Project Website: https://www.openms.de
Repository: https://github.com/OpenMS/OpenMS

Fred2

Python-based framework for computational immunomics.
Project Website: https://fred-2.github.io
Repository: https://github.com/FRED-2/Fred2

Claudio

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DNPM:DIP

The Data Integration Platform for the German Network of Personalized Medicine (DNPM).

FLAME

FLAME (Federated Learning and Analyses in Medicine) is the open-source core of the PrivateAIM initiative, enabling secure, decentralized data analysis across institutions without sharing patient data.

Code: https://github.com/PrivateAim Documentation: https://docs.privateaim.net/