OpenMS

Open-source software for mass spectrometry analysis.

Project Website: https://www.openms.de
Repository: https://github.com/OpenMS/OpenMS

BALL

Biochemical Algorithms Library in C++ for Rapid Software Prototyping.

Project Website: https://ball-project.org
Repository: https://github.com/BALL-Project

Fred2

Python-based framework for computational immunomics.

Project Website: https://fred-2.github.io
Repository: https://github.com/FRED-2/Fred2

XLEC

An integrative approach combining cross-linking data and evolutionary couplings for large-scale prediction and modeling of protein-protein interactions.

Repository: https://github.com/KohlbacherLab/XLEC

EpiToolKit 2.0

A web-based workbench for vaccine design.

Currently unavailable. We have to implement some GDPR requirements before going online again.

Webservice: https://epitoolkit.de

NRPSpredictor2

A program to predict adenylation domain specificity from sequence.

Webservice: https://abi-services.informatik.uni-tuebingen.de/nrps2/Controller?cmd=SubmitJob

MultiLoc2

Integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.

Webservice: https://abi-services.informatik.uni-tuebingen.de/multiloc2/webloc.cgi
Repository: https://github.com/KohlbacherLab/MultiLoc2

SherLoc2

A high-accuracy hybrid method for predicting subcellular localization of proteins.

Webservice: https://abi-services.informatik.uni-tuebingen.de/sherloc2/webloc.cgi
Repository: https://github.com/KohlbacherLab/SherLoc2

YLoc

An interpretable web server for predicting subcellular localization.

Webservice: https://abi-services.informatik.uni-tuebingen.de/yloc/webloc.cgi
Repository: https://github.com/KohlbacherLab/YLoc