Publications

342 entries « 7 of 7 »

Höglund, Annette; Dönnes, Pierre; Blum, Torsten; Adolph, Hans-Werner; Kohlbacher, Oliver

Using N-terminal targeting sequences, amino acid composition, and sequence motifs for predicting protein subcellular localization

Kurtz, Matthias Rarey Andrew Torda Stefan (Ed.): Proceedings of the German Conference on Bioinformatics (GCB 2005), pp. 45–59, GI, 2005.

(Links | BibTeX)

Klein, Christoph L; Kohlbacher, Oliver; Huber, Christian; Reinert, Knut

Reference methods and materials in standardisation and quality assurance

FEBS J., 272 (S1), 2005, (in press).

(BibTeX)

Rausch, Christian; Weber, Tilmann; Kohlbacher, Oliver; Wohlleben, Wolfgang; Huson, Daniel

Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using Transductive Support Vector Machines (TSVM)

Nucl. Acids Res., 33 (18), pp. 5799-5808, 2005.

(Links | BibTeX)

Berthold, Michael; Glen, Robert; Diederichs, Kay; Kohlbacher, Oliver; Fischer, Ingrid

Computational Life Sciences

Springer Lecture notes in Bioinformatics, 2005.

(Links | BibTeX)

Moll, Andreas; Hildebrandt, Andreas; Kerzmann, Andreas; Lenhof, Hans-Peter; Kohlbacher, Oliver

BALLView - An Open Source Tool for Molecular Modeling and Visualization

Haasis, Klumpp Spath D D K (Ed.): Tagungsband zum doIT Software-Forschungstag 2005, pp. 203–214, MFG Stiftung, Stuttgart, 2005.

(BibTeX)

Höglund, A; Dönnes, P; Adolph, HW; Kohlbacher, O

From prediction of subcellular localization to functional classification: Discrimination of DNA-packing and other nuclear proteins

Online Journal of Bioinformatics, 6 (1), pp. 51-64, 2005.

(Links | BibTeX)

Supper, Jochen; Dönnes, Pierre; Kohlbacher, Oliver

Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision Rules

Springer Lecture Notes in Computer Science (LNCS), 3686 , pp. 446-453, 2005.

(Links | BibTeX)

Dönnes, Pierre; Kohlbacher, Oliver

Integrated modelling of the major events in the MHC class I antigen processing pathway

Protein Sci., 14 (8), pp. 2132-2140, 2005.

(Links | BibTeX)

Schuler, Mathias M; Dönnes, Pierre; Nastke, Maria-Dorothea; Kohlbacher, Oliver; Rammensee, Hans-Georg; Stevanovic, Stefan

SNEP: SNP-derived Epitope Prediction program for minor H antigens.

Immunogenetics, 57 (11), pp. 816-820, 2005.

(Links | BibTeX)

Schuler, Mathias; Dönnes, Pierre; Nastke, Maria; Kohlbacher, Oliver; Rammensee, H-G; Stevanovic, Stefan

SNEP: SNP-derived Epitope Prediction program for minor H antigens

Kabelitz, Dietrich (Ed.): Joint Annual Meeting of the German and Scandinavian Societies of Immunology, 21-24 September 2005, Kiel, Germany, pp. 361-622, Immunobiology 210(6-8), 2005.

(BibTeX)

Neumann, Dirk; Lehr, Claus-Michael; Lenhof, Hans-Peter; Kohlbacher, Oliver

Computational modeling of the sugar–lectin interaction

Advanced Drug Delivery Reviews, 56 (4), pp. 437-457, 2004.

(Links | BibTeX)

Kohlbacher, Oliver; Reinert, Knut

Differenzielle Proteomanalyse - Experimentelle Methoden, Algorithmische Herausforderungen

IT - Information Technology, 46 (1), pp. 31-38, 2004, (article in German).

(Links | BibTeX)

Höglund, Annette; Kohlbacher, Oliver

From sequence to structure and back again: approaches for predicting protein-DNA binding

Proteome Science, 2 , pp. 3, 2004.

(Links | BibTeX)

Hildebrandt, Andreas; Blossey, Ralf; Rjasanow, Sergej; Kohlbacher, Oliver; Lenhof, Hans-Peter

Novel formulation of nonlocal electrostatics

Phys. Rev. Lett., 93 , pp. 108104, 2004.

(Links | BibTeX)

Istrail, Sorin; Florea, Liliana; Halldorsson, Bjarni V; Kohlbacher, Oliver; Schwartz, Russell S; Yap, Von Bing; Yewdell, Jonathan W; Hoffman, Stephen L

Comparative Immuno-Peptidomics of Humans and their Pathogens

Proc. Natl. Acad. Sci. USA, 101 (36), pp. 13268, 2004.

(Links | BibTeX)

Dönnes, Pierre; Höglund, Annette; Sturm, Marc; Comtesse, Nicole; Backes, Christina; Meese, Eckart; Kohlbacher, Oliver; Lenhof, Hans-Peter

Integrative analysis of cancer-related data using CAP

FASEB Journal, 18 (12), pp. 1465-1467, 2004.

(Links | BibTeX)

Dönnes, Pierre; Höglund, Annette

Predicting Protein Subcellular Localization: Past, Present, and Future

Genomics Proteomics Bioinformatics, 2 (4), pp. 209–215, 2004.

(Abstract | Links | BibTeX)

Kerzmann, Andreas; Neumann, Dirk; Kohlbacher, Oliver

High-Accuracy Prediction of Protein-Carbohydrate Interactions

Trends in Glycoscience and Glycotechnology, 16 , pp. S26, 2004.

(BibTeX)

Florea, Liliana; Halldórsson, Bjarni; Kohlbacher, Oliver; Schwartz, Russell; Hoffman, Stephen; Istrail, Sorin

Epitope Prediction Algorithms for Peptide based Vaccine Design

Proceedings of the 2nd IEEE Computer Society Conference on Bioinformatics, pp. 17-26, IEEE Computer Society, 2003, (PMID: 16826643).

(Links | BibTeX)

Hildebrandt, Andreas; Kohlbacher, Oliver; Blossey, Ralf; Lenhof, Hans-Peter

Using nonlocal electrostatics for solvation free energy computations: ions and small molecules

2003.

(Links | BibTeX)

Sandelin, Albin; Höglund, Annette; Lenhard, Boris; Wasserman, Wyeth

Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes

Funct Integr Genomics, 3 (3), pp. 125-134, 2003.

(BibTeX)

Althaus, Ernst; Kohlbacher, Oliver; Lenhof, Hans Peter; Müller, Peter

A Combinatorial Approach to Protein Docking with Flexible Side-Chains

J. Comput. Biol., 9 (4), pp. 597-612, 2002.

(Abstract | Links | BibTeX)

Neumann, Dirk; Kohlbacher, Oliver; Lenhof, Hans-Peter; Lehr, Claus-Michael

Protein-sugar interactions: Calculated versus experimental binding energies

Eur. J. Biochem., 269 (5), pp. 1518-1524, 2002.

(Links | BibTeX)

Neumann, Dirk; Kerzmann, Andreas; Kohlbacher, Oliver

Modelling the sugar-lectin interaction by computer simulated docking

Abstracts of the 20th Interlec Meeting, pp. 116, University of Copenhagen, Copenhagen, Denmark, 2002.

(BibTeX)

Sirava, Marite; Schäfer, Thomas; Eiglsperger, Markus; Kaufmann, Michael; Kohlbacher, Oliver; Bornberg-Bauer, Erich; Lenhof, Hans-Peter

BioMiner - modeling, analysing, and visualizing biochemical pathways and networks

Bioinformatics, 19 (10), pp. S219-230, 2002.

(Links | BibTeX)

Dönnes, Pierre; Elofsson, Arne

Prediction of MHC class I binding peptides, using SVMHC

BMC Bioinformatics, 3 (25), 2002.

(Links | BibTeX)

Kohlbacher, Oliver; Burchardt, Andreas; Moll, Andreas; Hildebrandt, Andreas; Bayer, Peter; Lenhof, Hans-Peter

Structure prediction of protein complexes by a NMR-based protein docking algorithm

J. Biomol. NMR, 20 , pp. 15-21, 2001.

(Abstract | Links | BibTeX)

Turner, Russell J; Chaturvedi, Kabir; Edwards, Nathan J; Fasulo, Daniel; Halpern, Aaron L; Huson, Daniel H; Remington, Karin A; Schwartz, Russell; Walenz, Brian; Yooseph, Shibu; Istrail, Sorin

Visualization Challenges for a New Cyberpharmaceutical Computing Paradigm

Proceedings of the IEEE Symposium on Parallel and Large-Data Visualization and Graphics (PVG2001), pp. 7–18, San Diego, USA,, 2001.

(BibTeX)

Kohlbacher, Oliver; Burchardt, Andreas; Hildebrandt, Andreas; Moll, Andreas; Bayer, Peter; Lenhof, Hans-Peter

A NMR-spectra-based scoring function for protein docking

Sankoff, David; Lengauer, Thomas (Ed.): RECOMB 2001, Proceedings of the Fifth Annual International Conference on Computational Molecular Biology, pp. 169-177, ACM press, 2001.

(Links | BibTeX)

Kohlbacher, Oliver

BALL - A Framework for Rapid Application Development in Molecular Modeling

Beiträge zum Heinz-Billing-Preis 2000, pp. 13-28, Gesellschaft für wissenschaftliche Datenverarbeitung mbH, Göttingen, 2001.

(Links | BibTeX)

Neumann, Dirk; Kohlbacher, Oliver; Haltner, Eleonore; Lenhof, Hans-Peter; Lehr, Claus-Michael

Modeling the Sugar Lectin Interaction by Computational Chemistry Relevant to Drug Design

Proc. 3rd World Meeting on Pharmaceutics, Biopharmaceutics and Pharmaceutical Technology, pp. 233, 2000.

(BibTeX)

Kohlbacher, Oliver; Lenhof, Hans-Peter

BALL - Rapid Software Prototyping in Computational Molecular Biology

Bioinformatics, 16 (9,), pp. 815–824, 2000.

(Abstract | Links | BibTeX)

Boghossian, N P; Kohlbacher, O; Lenhof, H P

Rapid software prototyping in molecular modeling using the biochemical algorithms library (BALL)

J. Exp. Algorithmics, 5 , pp. 16, 2000.

(BibTeX)

Althaus, Ernst; Kohlbacher, Oliver; Lenhof, Hans-Peter; Müller, Peter

A Combinatorial Approach to Protein Docking with Flexible Side-Chains

Shamir, Ron; Miyano, Satoru; Istrail, Sorin; Pevzner, Pavel; Waterman, Michael (Ed.): RECOMB 2000 -- Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, pp. 15–24, ACM press, 2000.

(BibTeX)

Althaus, Ernst; Kohlbacher, Oliver; Lenhof, Hans-Peter; Müller, Peter

A branch and cut algorithm for the optimal solution of the side-chain placement problem

Max-Planck-Institute für Informatik Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany, (MPI-I-2000-1-001), 2000.

(Links | BibTeX)

Kohlbacher, O; Lenhof, H -P

Rapid Software Prototyping in Computational Molecular Biology

Proceedings of the German Conference on Bioinformatics (GCB'99), 1999.

(BibTeX)

Boghossian, Nicolas Pascal; Kohlbacher, Oliver; Lenhof, Hans-Peter

BALL: Biochemical Algorithms Library

Vitter, J S; Zaroliagis, C D (Ed.): Algorithm Engineering, 3rd International Workshop, WAE'99, Proceedings, pp. 330-344, Springer, 1999.

(BibTeX)

Boghossian, Nicolas Pascal; Kohlbacher, Oliver; Lenhof, Hans-Peter

BALL: Biochemical Algorithms Library

Max-Planck-Institut für Informatik Saarbrücken, Germany, (MPI-I-99-1-002), 1999.

(Links | BibTeX)

Neumann, Dirk; Haltner, Elleonore; Lehr, Claus-Michael; Kohlbacher, Oliver; Lenhof, Hans-Peter

Investigating the Sugar-Lectin Interaction by Computational Chemistry: Tunneling the Epithelial Barrier

Abstracts of the 18th Interlec Meeting, pp. 549, 1998.

(BibTeX)

Immel, Alexander; Perini, Federicia; Rinne, Christoph; Meadows, John; Barquera, Rodrigo; Szolek, Andras; SUsat, Julian; Böhme, Lisa; Dose, Janina; Bonczarowska, Joanna; Drummer, Clara; Fuchs, Katharina; Ellinghaus, David; Kässens, Jan-Christian; Furholt, Martin; Kohlbacher, Oliver; Schade-Lindig, Sabine; Franke, Andre; Schreiber, Stefan; Krause, Johannes; Müller, Johannes; Lenz, Tobias L; Nebel, Almut; Krause-Kyora, Ben

Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry

Communications Biology, Forthcoming.

(Abstract | BibTeX)

Green, Anna; Elhabashy, Hadeer; Brock, Kelly; Maddamsetti, Rohan; Kohlbacher, Oliver; Marks, Debora S

Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences

Nat. Commun., Forthcoming.

(Abstract | BibTeX)

Green, Anna; Elhabashy, Hadeer; Brock, Kelly; Maddamsetti, Rohan; Kohlbacher, Oliver; Marks, Debora S

Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences

Nat. Commun., Forthcoming.

(BibTeX)

342 entries « 7 of 7 »

You hereby assure to have read and agree to our GDPR Disclaimer (Datenschutzerklärung).

GDPR Disclaimer

The cookie settings on this website are set to "allow cookies" to give you the best browsing experience possible. If you continue to use this website without changing your cookie settings or you click "Accept" below then you are consenting to this.

Close